Node 78
Ancestral DNA sequence:
Probabilities of bases and MPB (most probable base) at each site.
Site	A	C	G	T	MPB	Probability
1	1	0	0	0	A	1
2	0	0	0	1	T	1
3	0	0	1	0	G	1
4	1	0	0	0	A	1
5	0	0	0	1	T	1
6	0	1	0	0	C	1
7	0	0	1	0	G	1
8	0	0	0	1	T	1
9	0.07	0	0.93	0	G	0.93
10	0	0.04	0	0.96	T	0.96
11	0	0	0	1	T	1
12	0.99	0	0	0.01	A	0.99
13	0	0	1	0	G	1
14	1	0	0	0	A	1
15	0	0.95	0	0.05	C	0.95
16	1	0	0	0	A	1
17	0.86	0	0.14	0	A	0.86
18	0	1	0	0	C	1
19	0	0.07	0	0.93	T	0.93
20	0	0	0	1	T	1
21	1	0	0	0	A	1
22	0	0	1	0	G	1
23	1	0	0	0	A	1
24	0.06	0.06	0.87	0.01	G	0.87
25	0	1	0	0	C	1
26	1	0	0	0	A	1
27	1	0	0	0	A	1
28	0	0	0	1	T	1
29	0	0	0	1	T	1
30	0	0.97	0	0.03	C	0.97
31	1	0	0	0	A	1
32	1	0	0	0	A	1
33	1	0	0	0	A	1
34	0.03	0.27	0.52	0.18	G	0.52
35	0.05	0.13	0.01	0.8	T	0.8
36	0.01	0	0.99	0	G	0.99
37	0	0	1	0	G	1
38	0	0	0	1	T	1
39	0.82	0	0.18	0	A	0.82
40	0	0	0	1	T	1
41	1	0	0	0	A	1
42	0	0.4	0	0.6	T	0.6
43	0	1	0	0	C	1
44	0	0	1	0	G	1
45	0	0.98	0	0.02	C	0.98
46	0.98	0	0.02	0	A	0.98
47	1	0	0	0	A	1
48	0	0.98	0	0.02	C	0.98
49	0	0	1	0	G	1
50	0	0	1	0	G	1
51	0	0.05	0	0.95	T	0.95
52	0	1	0	0	C	1
53	0	0	1	0	G	1
54	0	0.01	0	0.99	T	0.99
55	1	0	0	0	A	1
56	1	0	0	0	A	1
57	1	0	0	0	A	1
58	0	0	0	1	T	1
59	0	0	1	0	G	1
60	0	0	1	0	G	1
61	1	0	0	0	A	1
62	1	0	0	0	A	1
63	0	0.96	0	0.04	C	0.96
64	0	1	0	0	C	1
65	0	0	1	0	G	1
66	0	1	0	0	C	1
67	0	0	0	1	T	1
68	0	0	1	0	G	1
69	0	0.03	0	0.97	T	0.97
70	0	0	1	0	G	1
71	0	0	0	1	T	1
72	0.69	0	0.3	0	A	0.69
73	0	0	1	0	G	1
74	1	0	0	0	A	1
75	1	0	0	0	A	1
76	0	0	1	0	G	1
77	0	1	0	0	C	1
78	0.01	0.82	0.03	0.14	C	0.82
79	1	0	0	0	A	1
80	0	0	0	1	T	1
81	0	0.8	0	0.2	C	0.8
82	0.78	0	0.22	0	A	0.78
83	1	0	0	0	A	1
84	0.04	0.73	0.02	0.21	C	0.73
85	1	0	0	0	A	1
86	1	0	0	0	A	1
87	0	1	0	0	C	1
88	1	0	0	0	A	1
89	0	0	0	1	T	1
90	0	0.99	0	0.01	C	0.99
91	0.02	0	0.98	0	G	0.98
92	0.67	0	0.33	0	A	0.67
93	0.06	0.88	0.02	0.05	C	0.88
94	1	0	0	0	A	1
95	1	0	0	0	A	1
96	0	0.59	0	0.41	C	0.59
97	1	0	0	0	A	1
98	0	0	0	1	T	1
99	0	0.97	0.02	0.01	C	0.97
100	1	0	0	0	A	1
101	1	0	0	0	A	1
102	0.99	0	0	0	A	0.99
103	0	0	1	0	G	1
104	1	0	0	0	A	1
105	0	0.27	0	0.73	T	0.73
106	0	0	1	0	G	1
107	0	0	1	0	G	1
108	0	1	0	0	C	1
109	0	0	1	0	G	1
110	0	0	0	1	T	1
111	0.05	0.67	0.22	0.07	C	0.67
112	1	0	0	0	A	1
113	0	0	0	1	T	1
114	0	0	1	0	G	1
115	0	1	0	0	C	1
116	1	0	0	0	A	1
117	0	0.98	0	0.02	C	0.98
118	0	0	0	1	T	1
119	0	1	0	0	C	1
120	0.04	0.45	0.27	0.23	C	0.45
121	1	0	0	0	A	1
122	0	0	0	1	T	1
123	0	0.72	0	0.28	C	0.72
124	0	0	1	0	G	1
125	0	0	1	0	G	1
126	0	0.69	0	0.31	C	0.69
127	0	0	1	0	G	1
128	1	0	0	0	A	1
129	0	0.04	0	0.96	T	0.96
130	0	0	0	1	T	1
131	0	1	0	0	C	1
132	0.89	0	0.1	0.01	A	0.89
133	0	1	0	0	C	1
134	0	0	0	1	T	1
135	0	0	1	0	G	1
136	0	0	1	0	G	1
137	0	0	0	1	T	1
138	0.06	0.03	0.66	0.24	G	0.66
139	0	0	0	1	T	1
140	1	0	0	0	A	1
141	0	0.99	0	0.01	C	0.99
142	1	0	0	0	A	1
143	0	0	0	1	T	1
144	0	0	1	0	G	1
145	0.47	0	0.53	0	G	0.53
146	0	0	0	1	T	1
147	0.02	0.02	0.01	0.95	T	0.95
148	0	0	1	0	G	1
149	1	0	0	0	A	1
150	0.99	0	0.01	0	A	0.99
151	0	0	1	0	G	1
152	1	0	0	0	A	1
153	0	0.69	0	0.3	C	0.69
154	0	0	1	0	G	1
155	0	0	1	0	G	1
156	0	0.78	0	0.22	C	0.78
157	0.95	0	0.05	0	A	0.95
158	0	0.05	0	0.94	T	0.94
159	0	0.95	0	0.04	C	0.95
160	0	0	1	0	G	1
161	0	1	0	0	C	1
162	0.33	0.2	0.11	0.36	T	0.36
163	0.24	0.69	0.03	0.04	C	0.69
164	0.99	0	0	0	A	0.99
165	0.85	0	0.14	0	A	0.85
166	0.33	0.52	0.14	0.02	C	0.52
167	1	0	0	0	A	1
168	0.21	0.07	0.7	0.02	G	0.7
169	1	0	0	0	A	1
170	0	1	0	0	C	1
171	0.02	0.91	0.01	0.06	C	0.91
172	0	0	1	0	G	1
173	1	0	0	0	A	1
174	0.75	0.01	0.24	0	A	0.75
175	0.97	0.02	0.01	0	A	0.97
176	0.92	0.03	0.01	0.04	A	0.92
177	0.12	0.74	0.13	0.02	C	0.74
178	0	0	0	1	T	1
179	0	0	0	1	T	1
180	0	0.34	0	0.66	T	0.66
181	0.62	0	0.38	0	A	0.62
182	0	0	0	0.99	T	0.99
183	0.03	0.85	0.01	0.12	C	0.85
184	0	0	1	0	G	1
185	0	0	1	0	G	1
186	0	0.55	0	0.45	C	0.55
187	0.07	0.92	0	0.01	C	0.92
188	1	0	0	0	A	1
189	0	0.99	0	0.01	C	0.99
190	0	1	0	0	C	1
191	0	0	1	0	G	1
192	0	0.01	0	0.99	T	0.99
193	0	1	0	0	C	1
194	0	0	1	0	G	1
195	0	0.01	0	0.98	T	0.98
196	0	0	0	1	T	1
197	1	0	0	0	A	1
198	0	1	0	0	C	1
199	0	0	0	1	T	1
200	0	0	0	1	T	1
201	0	1	0	0	C	1
202	0	0	1	0	G	1
203	1	0	0	0	A	1
204	0	0.01	0	0.98	T	0.98
205	0	0	1	0	G	1
206	0	0	0	1	T	1
207	0	0	0.99	0.01	G	0.99
208	0	1	0	0	C	1
209	1	0	0	0	A	1
210	0	0	0	1	T	1
211	0	0	0	1	T	1
212	1	0	0	0	A	1
213	0	1	0	0	C	1
214	0	0	0	1	T	1
215	1	0	0	0	A	1
216	0	1	0	0	C	1
217	0	0.99	0	0.01	C	0.99
218	0	0	0	1	T	1
219	0.03	0.91	0.01	0.04	C	0.91
220	0	0	1	0	G	1
221	1	0	0	0	A	1
222	1	0	0	0	A	1
223	0	0	1	0	G	1
224	0	0	1	0	G	1
225	0	0.86	0	0.13	C	0.86
226	0	0.99	0	0.01	C	0.99
227	0	0	1	0	G	1
228	0	0.04	0	0.96	T	0.96
229	0	0	1	0	G	1
230	1	0	0	0	A	1
231	1	0	0	0	A	1
232	1	0	0	0	A	1
233	0	1	0	0	C	1
234	0.02	0.81	0.07	0.1	C	0.81
235	0	0	1	0	G	1
236	0	0	0	1	T	1
237	0.04	0.05	0.15	0.76	T	0.76
238	0	0	1	0	G	1
239	1	0	0	0	A	1
240	0.03	0	0.97	0	G	0.97
241	0	0	0	1	T	1
242	0	0	0	1	T	1
243	0	0.83	0	0.17	C	0.83
244	0	0	1	0	G	1
245	0	1	0	0	C	1
246	0.02	0.72	0.14	0.11	C	0.72
247	0.66	0	0.33	0	A	0.66
248	0.9	0	0.1	0	A	0.9
249	0.03	0.8	0.01	0.16	C	0.8
250	1	0	0	0	A	1
251	1	0	0	0	A	1
252	0.93	0	0.07	0	A	0.93
253	0.11	0.32	0.15	0.43	T	0.43
254	0.71	0.21	0.05	0.03	A	0.71
255	0.14	0.56	0.03	0.27	C	0.56
256	0.02	0.02	0.96	0.01	G	0.96
257	0.99	0	0.01	0	A	0.99
258	0.46	0.19	0.3	0.05	A	0.46
259	0	0.99	0	0.01	C	0.99
260	0	0	0	1	T	1
261	0.35	0.01	0.63	0.01	G	0.63
262	0.99	0	0.01	0	A	0.99
263	0.78	0.15	0.05	0.02	A	0.78
264	0.35	0.52	0.09	0.04	C	0.52
265	0.55	0.35	0.07	0.03	A	0.55
266	0	0	0	1	T	1
267	0.07	0.38	0.03	0.52	T	0.52
268	0.01	0	0.99	0	G	0.99
269	0.91	0.03	0	0.06	A	0.91
270	0.11	0.01	0.85	0.03	G	0.85
271	0	0.99	0	0	C	0.99
272	1	0	0	0	A	1
273	0.57	0	0.42	0	A	0.57
274	0	0	1	0	G	1
275	0	1	0	0	C	1
276	0.03	0.09	0.01	0.87	T	0.87
277	0	0	0	1	T	1
278	1	0	0	0	A	1
279	0	0.82	0	0.18	C	0.82
280	0	1	0	0	C	1
281	0	0	1	0	G	1
282	0.18	0.7	0.02	0.1	C	0.7
283	0	0	1	0	G	1
284	1	0	0	0	A	1
285	0	0.06	0	0.94	T	0.94
286	0	0	1	0	G	1
287	1	0	0	0	A	1
288	1	0	0	0	A	1
289	1	0	0	0	A	1
290	0	1	0	0	C	1
291	0	0.89	0	0.11	C	0.89
292	0	0	1	0	G	1
293	1	0	0	0	A	1
294	0	1	0	0	C	1
295	0	1	0	0	C	1
296	0	0	1	0	G	1
297	0	0.81	0	0.19	C	0.81
298	0	0	1	0	G	1
299	1	0	0	0	A	1
300	1	0	0	0	A	1
301	0	0	0	1	T	1
302	0.9	0	0.09	0.01	A	0.9
303	0.01	0.11	0.06	0.81	T	0.81
304	0	1	0	0	C	1
305	0	0	0	1	T	1
306	0.79	0	0.2	0.01	A	0.79
307	0	0.44	0	0.56	T	0.56
308	0.49	0.51	0	0	C	0.51
309	0.94	0.01	0.03	0.01	A	0.94
310	0	0	1	0	G	1
311	0	0	1	0	G	1
312	0	0.35	0	0.64	T	0.64
313	0	0.98	0	0.02	C	0.98
314	1	0	0	0	A	1
315	0.89	0.02	0.08	0.01	A	0.89
316	0	0	0	0	-	0
317	0	0	0	0	-	0
318	0	0	0	0	-	0
319	0	0	1	0	G	1
320	0	0	1	0	G	1
321	0	0.02	0	0.98	T	0.98
322	0	0	1	0	G	1
323	1	0	0	0	A	1
324	1	0	0	0	A	1
325	0.98	0	0.01	0.02	A	0.98
326	0	1	0	0	C	1
327	0.04	0.14	0.01	0.81	T	0.81
328	0	1	0	0	C	1
329	0	0	1	0	G	1
330	0	0.14	0	0.86	T	0.86
331	0	0	1	0	G	1
332	1	0	0	0	A	1
333	0.78	0	0.22	0	A	0.78
334	0	0.26	0	0.74	T	0.74
335	0	0	0	1	T	1
336	0.56	0.01	0.37	0.06	A	0.56
337	0.02	0.02	0	0.96	T	0.96
338	0.18	0.03	0.78	0.01	G	0.78
339	0	0.29	0	0.7	T	0.7
340	0	0	1	0	G	1
341	1	0	0	0	A	1
342	1	0	0	0	A	1
343	0	0	1	0	G	1
344	0	0	1	0	G	1
345	0	0.98	0	0.02	C	0.98
346	0	1	0	0	C	1
347	1	0	0	0	A	1
348	0.91	0	0.09	0	A	0.91
349	0	0	1	0	G	1
350	0	0	0	1	T	1
351	0.02	0.77	0.17	0.04	C	0.77
352	0	0	1	0	G	1
353	0	0.14	0	0.86	T	0.86
354	0.05	0.08	0.15	0.72	T	0.72
355	1	0	0	0	A	1
356	0	0	0	1	T	1
357	0	0.06	0	0.94	T	0.94
358	0	0	0	1	T	1
359	0	0	0	1	T	1
360	0	0	0	1	T	1
361	0	0	1	0	G	1
362	1	0	0	0	A	1
363	0.97	0.01	0.02	0	A	0.97
364	1	0	0	0	A	1
365	1	0	0	0	A	1
366	0	1	0	0	C	1
367	0.09	0	0.91	0	G	0.91
368	1	0	0	0	A	1
369	0	0.88	0	0.12	C	0.88
370	0.98	0	0.02	0	A	0.98
371	1	0	0	0	A	1
372	0.94	0	0.06	0	A	0.94
373	0	0	1	0	G	1
374	0	1	0	0	C	1
375	0.05	0.3	0.3	0.36	T	0.36
376	0	0	0	1	T	1
377	1	0	0	0	A	1
378	0	1	0	0	C	1
379	0	1	0	0	C	1
380	0	0	1	0	G	1
381	0	0.87	0	0.13	C	0.87
382	0	0	0	1	T	1
383	0	0	0	1	T	1
384	0	0.97	0	0.03	C	0.97
385	0	0.94	0	0.06	C	0.94
386	0.94	0	0.06	0	A	0.94
387	0	0.96	0	0.04	C	0.96
388	0	0	1	0	G	1
389	0	0	1	0	G	1
390	0	0.27	0	0.73	T	0.73
391	0	0	1	0	G	1
392	1	0	0	0	A	1
393	0	0.89	0	0.11	C	0.89
394	0.99	0	0.01	0	A	0.99
395	1	0	0	0	A	1
396	0	1	0	0	C	1
397	0	1	0	0	C	1
398	0	0	1	0	G	1
399	0.62	0.12	0.24	0.03	A	0.62
400	0	0	1	0	G	1
401	0	0	0	1	T	1
402	0.33	0.36	0.06	0.25	C	0.36
403	0	0	0	0	-	0
404	0	0	0	0	-	0
405	0	0	0	0	-	0
406	0	0	0	0	-	0
407	0	0	0	0	-	0
408	0	0	0	0	-	0
409	0.97	0.02	0.01	0	A	0.97
410	0	0	1	0	G	1
411	0.95	0.02	0.02	0.01	A	0.95
412	1	0	0	0	A	1
413	1	0	0	0	A	1
414	1	0	0	0	A	1
415	0	0	1	0	G	1
416	0	0	0	1	T	1
417	0.01	0	0.99	0	G	0.99
418	0	0	1	0	G	1
419	0	0	0	1	T	1
420	0	0	1	0	G	1
421	0	1	0	0	C	1
422	0	0	0	1	T	1
423	0.02	0	0.98	0	G	0.98
424	1	0	0	0	A	1
425	1	0	0	0	A	1
426	1	0	0	0	A	1
427	0	0	1	0	G	1
428	0	0	0	1	T	1
429	0.05	0.07	0.86	0.02	G	0.86
430	1	0	0	0	A	1
431	0	1	0	0	C	1
432	0.25	0.31	0.41	0.04	G	0.41
433	1	0	0	0	A	1
434	0	0	0	1	T	1
435	0.06	0.62	0.02	0.31	C	0.62
436	0	0	1	0	G	1
437	1	0	0	0	A	1
438	1	0	0	0	A	1
439	0	0	1	0	G	1
440	1	0	0	0	A	1
441	0	0.03	0	0.97	T	0.97
442	0	0	1	0	G	1
443	0	0	1	0	G	1
444	0	0.24	0	0.76	T	0.76
445	0	0	0	1	T	1
446	1	0	0	0	A	1
447	0	1	0	0	C	1
448	0	0	0	1	T	1
449	0	0	0	1	T	1
450	0	1	0	0	C	1
451	0	0.96	0	0.04	C	0.96
452	0	0	0	1	T	1
453	0.63	0.15	0.17	0.05	A	0.63
454	1	0	0	0	A	1
455	1	0	0	0	A	1
456	0	0.11	0	0.89	T	0.89
457	1	0	0	0	A	1
458	1	0	0	0	A	1
459	0.87	0	0.13	0	A	0.87
460	0	0	0	1	T	1
461	1	0	0	0	A	1
462	1	0	0	0	A	1


The most probable ancestral DNA sequence is:
ATGATCGTGTTAGACAACTTAGAGCAATTCAAAGTGGTATATCGCAACGGTCGTAAATGGAACCGCTGTGTAGAAGCCATCAACAACATCGACAACATCAAAGATGGCGTCATGCACTCCATCGGCGATTCACTGGTGTACATGGTTGAAGACGGCATCGCTCAACAGACCGAAAACTTTATCGGCCACCGTCGTTACTTCGATGTGCATTACTACCTCGAAGGCCGTGAAACCGTTGAGTTCGCCAACAAATACGAACTGAACATTGAGCAAGCTTACCGCGATGAAACCGACCGCGAATATCTATCAGGTCAA---GGTGAAACTCGTGAATTATGTGAAGGCCAAGTCGTTATTTTTGAAAACGACAAAGCTTACCGCTTCCACGGTGACAACCGAGTC------AGAAAAGTGGTGCTGAAAGTGACGATCGAAGATGGTTACTTCCTAAATAAATAA

The most probable DNA sequence without gaps is:
ATGATCGTGTTAGACAACTTAGAGCAATTCAAAGTGGTATATCGCAACGGTCGTAAATGGAACCGCTGTGTAGAAGCCATCAACAACATCGACAACATCAAAGATGGCGTCATGCACTCCATCGGCGATTCACTGGTGTACATGGTTGAAGACGGCATCGCTCAACAGACCGAAAACTTTATCGGCCACCGTCGTTACTTCGATGTGCATTACTACCTCGAAGGCCGTGAAACCGTTGAGTTCGCCAACAAATACGAACTGAACATTGAGCAAGCTTACCGCGATGAAACCGACCGCGAATATCTATCAGGTCAAGGTGAAACTCGTGAATTATGTGAAGGCCAAGTCGTTATTTTTGAAAACGACAAAGCTTACCGCTTCCACGGTGACAACCGAGTCAGAAAAGTGGTGCTGAAAGTGACGATCGAAGATGGTTACTTCCTAAATAAATAA

The accuracy score for that sequence is 0.936799116997793

The accuracy score is defined as the average probability of
the most probable bases.  It is NOT the probability that the
most probable sequence is correct.  That probability is 3.80583598826033e-16.
The natural log of that probability is -35.5048258129019.

Ancestral Protein Sequence:
Column headings:
MPAA = most probable amino acid, pMPAA = probability of MPAA
MPAA2 = second most probable amino acid, pMPAA2 = probability of MPAA2
Ratio = pMPAA/pMPAA2,  Unreliable means Ratio <1.5

MPAA	pMPAA	MPAA2	pMPAA2	Ratio
M	1	A	0	9999	
I	1	A	0	9999	
V	1	A	0	9999	
L	0.9904	F	0.0096	103.166666666667	
D	1	A	0	9999	
N	0.86	S	0.14	6.14285714285714	
L	1	A	0	9999	
E	0.93	D	0.07	13.2857142857143	
Q	1	A	0	9999	
F	1	A	0	9999	
K	1	A	0	9999	
V	0.416	L	0.36	1.15555555555556	Unreliable
V	1	A	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
N	0.98	D	0.02	49	
G	1	A	0	9999	
R	1	A	0	9999	
K	1	A	0	9999	
W	1	A	0	9999	
N	1	A	0	9999	
R	1	A	0	9999	
C	1	A	0	9999	
V	0.99	A	0	9999	
E	1	A	0	9999	
A	1	R	0	9999	
I	1	A	0	9999	
N	0.7332	D	0.2068	3.54545454545455	
N	1	A	0	9999	
I	1	A	0	9999	
D	0.610638	G	0.326634	1.86948694869487	
N	1	A	0	9999	
I	0.98	M	0.02	49	
K	0.99	A	0	9999	
D	1	A	0	9999	
G	1	A	0	9999	
V	1.01	A	0	9999	
M	1	A	0	9999	
H	1	A	0	9999	
S	0.99	A	0	9999	
I	1	A	0	9999	
G	1	A	0	9999	
D	1	A	0	9999	
S	1	A	0	9999	
L	1	A	0	9999	
V	0.99	A	0	9999	
Y	1	A	0	9999	
M	1	A	0	9999	
V	0.53	I	0.4653	1.13905007522029	Unreliable
E	1	A	0	9999	
D	0.99	A	0	9999	
G	1	A	0	9999	
I	0.88407	T	0.047025	18.8	
A	1	R	0	9999	
Q	0.676269	K	0.235224	2.875	
Q	0.4732	K	0.3003	1.57575757575758	
T	1	A	0	9999	
E	0.99	D	0.01	99	
N	0.678224	K	0.2231	3.04	
F	1	A	0	9999	
I	0.6138	V	0.379962	1.61542470036477	
G	1	A	0	9999	
H	0.92	N	0.07	13.1428571428571	
R	1	A	0	9999	
R	0.99	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
D	0.99	A	0	9999	
V	1	A	0	9999	
H	1	A	0	9999	
Y	1	A	0	9999	
Y	1	A	0	9999	
L	0.9805	F	0.0095	103.210526315789	
E	1	A	0	9999	
G	0.99	A	0	9999	
R	0.99	C	0.01	99	
E	1	A	0	9999	
T	1	A	0	9999	
V	1	A	0	9999	
E	1	A	0	9999	
F	1	A	0	9999	
A	0.99	R	0	9999	
N	0.57024	D	0.28512	2	
K	1	A	0	9999	
Y	0.253399	H	0.188576	1.34375	Unreliable
E	0.722304	D	0.228096	3.16666666666667	
L	0.9998	F	0.0002	4999	
N	0.432432	K	0.339768	1.27272727272727	Unreliable
I	0.5335	L	0.353	1.51133144475921	
E	0.864864	V	0.0594	14.56	
Q	0.9801	A	0	9999	
A	1	R	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
D	1	A	0	9999	
E	1	A	0	9999	
T	1	A	0	9999	
D	1	A	0	9999	
R	1	A	0	9999	
E	1	A	0	9999	
Y	0.828	C	0.0828	10	
L	1	A	0	9999	
S	0.282744	X	0.266168	1.06227645697454	Unreliable
G	0.99	A	0	9999	
Q	0.9506	H	0.0294	32.3333333333333	
	0	-	0	0
G	1	A	0	9999	
E	1	A	0	9999	
T	0.98	S	0.02	49	
R	1	A	0	9999	
E	1	A	0	9999	
L	0.9482	F	0.0518	18.3050193050193	
C	0.741312	Y	0.171072	4.33333333333333	
E	1	A	0	9999	
G	1	A	0	9999	
Q	1	A	0	9999	
V	1	A	0	9999	
V	0.86	A	0.14	6.14285714285714	
I	1	A	0	9999	
F	1	A	0	9999	
E	0.99	D	0.01	99	
N	1	A	0	9999	
D	0.91	N	0.09	10.1111111111111	
K	0.98	E	0.02	49	
A	1.01	R	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
F	1	A	0	9999	
H	0.8836	R	0.0564	15.6666666666667	
G	1	A	0	9999	
D	1	A	0	9999	
N	0.99	D	0.01	99	
R	1.01	A	0	9999	
V	1	A	0	9999	
	0	-	0	0
	0	-	0	0
R	0.9609	S	0.0291	33.020618556701	
K	1	A	0	9999	
V	1	A	0	9999	
V	1	A	0	9999	
L	1	A	0	9999	
K	1	A	0	9999	
V	1	A	0	9999	
T	1.01	A	0	9999	
I	0.99	M	0.02	49.5	
E	1	A	0	9999	
D	1	A	0	9999	
G	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
L	0.992	F	0.008	124	
N	1	A	0	9999	
K	1	A	0	9999	
X	1	A	0	9999	


The most probable ancestral protein sequence is:
MIVLDNLEQFKVVYRNGRKWNRCVEAINNIDNIKDGVMHSIGDSLVYMVEDGIAQQTENFIGHRRYFDVHYYLEGRETVEFANKYELNIEQAYRDETDREYLSGQ-GETRELCEGQVVIFENDKAYRFHGDNRV--RKVVLKVTIEDGYFLNKX

The most probable ancestral protein sequence without gaps is:
MIVLDNLEQFKVVYRNGRKWNRCVEAINNIDNIKDGVMHSIGDSLVYMVEDGIAQQTENFIGHRRYFDVHYYLEGRETVEFANKYELNIEQAYRDETDREYLSGQGETRELCEGQVVIFENDKAYRFHGDNRVRKVVLKVTIEDGYFLNKX

The accuracy score for that sequence is 0.945829774834437

The accuracy score is defined as the average probability of
the most probable amino acids.  It is NOT the probability that the
most probable sequence is correct.  That probability is 1.44293142159847e-05
The natural log of that probability is -11.1462487111876.

